If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 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'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 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'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 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'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 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'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 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'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 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'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ), 'gf_id' => 'HOM05D000732', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000732' ), 'data_identifier' => 'HOM05D000732', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000732', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p41320' => 'bna', 'A04p08730' => 'bna', 'A04p20940' => 'bna', 'A05p13680' => 'bna', 'A05p19080' => 'bna', 'A05p35300' => 'bna', 'A08p06980' => 'bna', 'A08p18310' => 'bna', 'A08p28020' => 'bna', 'A09p41030' => 'bna', 'A09p46000' => 'bna', 'A09p56870' => 'bna', 'A10p07180' => 'bna', 'A10p08330' => 'bna', 'A10p33080' => 'bna', 'Aa31LG10G1350' => 'aar', 'Aa31LG2G18700' => 'aar', 'Aa31LG4G10600' => 'aar', 'Aa31LG5G5100' => 'aar', 'Aa31LG7G7670' => 'aar', 'Aa31LG8G1400' => 'aar', 'Aa31LG9G4370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1564' => 'aag', 'Actinidia00375' => 'ach', 'Actinidia09400' => 'ach', 'Actinidia13509' => 'ach', 'Actinidia15046' => 'ach', 'Actinidia20336' => 'ach', 'Actinidia21587' => 'ach', 'Actinidia21807' => 'ach', 'Actinidia21808' => 'ach', 'Actinidia24447' => 'ach', 'Actinidia27087' => 'ach', 'Actinidia34579' => 'ach', 'Ah.02g129920' => 'amhyb', 'Ah.09g226940' => 'amhyb', 'Ah.13g073720' => 'amhyb', 'Ah.15g095110' => 'amhyb', 'AL1G19190' => 'aly', 'AL1G37550' => 'aly', 'AL2G29650' => 'aly', 'AL3G26400' => 'aly', 'AL3G33040' => 'aly', 'AL4G27220' => 'aly', 'AL9U10290' => 'aly', 'Aqoxy2G00541' => 'aox', 'Aqoxy2G04130' => 'aox', 'Aqoxy3G01008' => 'aox', 'Aqoxy4G03286' => 'aox', 'Aqoxy6G02671' => 'aox', 'Aqoxy6G02987' => 'aox', 'Aqoxy7G04089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3B9WQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BRQ4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89WMF4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93QG5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7IX4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AVJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H7525J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P16UST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIE3V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6CLIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB2WMC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0668Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZC37QS' => 'arhy', 'AT1G08760' => 'ath', 'AT1G23790' => 'ath', 'AT1G70340' => 'ath', 'AT2G31920' => 'ath', 'AT3G14170' => 'ath', 'AT3G19610' => 'ath', 'AT4G13370' => 'ath', 'ATR0208G035' => 'atr', 'ATR0552G001' => 'atr', 'ATR0554G001' => 'atr', 'ATR0681G261' => 'atr', 'ATR0730G107' => 'atr', 'ATR0743G126' => 'atr', 'ATR0921G002' => 'atr', 'ATR1127G067' => 'atr', 'Atru.chr1.4101' => 'acertr', 'Atru.chr11.2022' => 'acertr', 'Atru.chr11.2716' => 'acertr', 'Atru.chr4.1266' => 'acertr', 'Atru.chr4.1267' => 'acertr', 'Atru.chr7.1292' => 'acertr', 'AUR62001438' => 'cqu', 'AUR62002353' => 'cqu', 'AUR62005377' => 'cqu', 'AUR62009927' => 'cqu', 'AUR62011033' => 'cqu', 'AUR62014040' => 'cqu', 'AUR62023831' => 'cqu', 'AUR62033406' => 'cqu', 'BcaB01g00596' => 'bca', 'BcaB02g07395' => 'bca', 'BcaB02g10423' => 'bca', 'BcaB02g10424' => 'bca', 'BcaB03g11954' => 'bca', 'BcaB03g13315' => 'bca', 'BcaB03g16094' => 'bca', 'BcaB03g16369' => 'bca', 'BcaB04g17701' => 'bca', 'BcaB04g19053' => 'bca', 'BcaB05g24559' => 'bca', 'BcaC01g00955' => 'bca', 'BcaC01g03615' => 'bca', 'BcaC02g09190' => 'bca', 'BcaC02g09354' => 'bca', 'BcaC02g09430' => 'bca', 'BcaC02g10479' => 'bca', 'BcaC02g10480' => 'bca', 'BcaC02g11298' => 'bca', 'BcaC03g15178' => 'bca', 'BcaC03g17270' => 'bca', 'BcaC03g18055' => 'bca', 'BcaC05g24917' => 'bca', 'BcaC05g26291' => 'bca', 'BcaC05g29119' => 'bca', 'BcaC07g37375' => 'bca', 'BcaC07g37376' => 'bca', 'BcaC07g38445' => 'bca', 'BcaC07g39214' => 'bca', 'BcaC07g41927' => 'bca', 'BcaC08g42882' => 'bca', 'BcaC08g45932' => 'bca', 'BcaC08g45933' => 'bca', 'BcaNung06266' => 'bca', 'BolC2t07695H' => 'bol', 'BolC2t09910H' => 'bol', 'BolC2t11300H' => 'bol', 'BolC2t12165H' => 'bol', 'BolC2t12166H' => 'bol', 'BolC3t17338H' => 'bol', 'BolC3t20923H' => 'bol', 'BolC4t23336H' => 'bol', 'BolC4t24383H' => 'bol', 'BolC4t25829H' => 'bol', 'BolC5t29442H' => 'bol', 'BolC5t30996H' => 'bol', 'BolC5t34025H' => 'bol', 'BolC6t35234H' => 'bol', 'BolC7t41407H' => 'bol', 'BolC8t47614H' => 'bol', 'BolC8t47676H' => 'bol', 'BolC8t49855H' => 'bol', 'BolC8t52511H' => 'bol', 'BraA01t02536Z' => 'bra', 'BraA01t03419Z' => 'bra', 'BraA02t06951Z' => 'bra', 'BraA03t13286Z' => 'bra', 'BraA04t16570Z' => 'bra', 'BraA05t20305Z' => 'bra', 'BraA05t22340Z' => 'bra', 'BraA06t23776Z' => 'bra', 'BraA08t32708Z' => 'bra', 'BraA08t33788Z' => 'bra', 'BraA08t34732Z' => 'bra', 'BraA09t39596Z' => 'bra', 'BraA09t41920Z' => 'bra', 'BraSC37t46170Z' => 'bra', 'C02p27580' => 'bna', 'C02p38990' => 'bna', 'C02p61200' => 'bna', 'C03p50480' => 'bna', 'C03p86320' => 'bna', 'C04p17880' => 'bna', 'C04p28370' => 'bna', 'C04p39850' => 'bna', 'C04p42540' => 'bna', 'C05p22970' => 'bna', 'C05p53480' => 'bna', 'C06p00980' => 'bna', 'C06p37290' => 'bna', 'C07p09660' => 'bna', 'C07p09680' => 'bna', 'C08p07680' => 'bna', 'C08p08240' => 'bna', 'C08p12140' => 'bna', 'C08p12150' => 'bna', 'C08p22100' => 'bna', 'CAN.G1243.11' => 'can', 'CAN.G1361.8' => 'can', 'CAN.G1710.7' => 'can', 'CAN.G196.2' => 'can', 'CAN.G388.57' => 'can', 'CAN.G606.55' => 'can', 'CAN.G65.154' => 'can', 'CAN.G695.3' => 'can', 'CAN.G862.33' => 'can', 'CANSAT01G2807' => 'cansat', 'CANSAT11G0131' => 'cansat', 'CANSAT78G0837' => 'cansat', 'CANSAT78G1705' => 'cansat', 'CARHR008680' => 'chi', 'CARHR024210' => 'chi', 'CARHR063520' => 'chi', 'CARHR089030' => 'chi', 'CARHR095060' => 'chi', 'CARHR125630' => 'chi', 'CARHR218940' => 'chi', 'CARHR258880' => 'chi', 'Carub.0001s0810' => 'cru', 'Carub.0001s2330' => 'cru', 'Carub.0002s1703' => 'cru', 'Carub.0003s1376' => 'cru', 'Carub.0003s1947' => 'cru', 'Carub.0004s1322' => 'cru', 'Carub.0007s2920' => 'cru', 'Ca_01248_v3' => 'car', 'Ca_02543_v3' => 'car', 'Ca_03225_v3' => 'car', 'Ca_04598_v3' => 'car', 'Ca_19528_v3' => 'car', 'Ca_20803_v3' => 'car', 'CBR_g49456' => 'cbr', 'Cc02_g19800' => 'ccan', 'Cc02_g26770' => 'ccan', 'Cc04_g00970' => 'ccan', 'Cc06_g09290' => 'ccan', 'Cc11_g14660' => 'ccan', 'CDE02G0077' => 'cde', 'CDE04G1079' => 'cde', 'CDE05G0223' => 'cde', 'CDE06G0908' => 'cde', 'CDE07G0191' => 'cde', 'CDE07G0582' => 'cde', 'CDE09G0408' => 'cde', 'CDE09G0726' => 'cde', 'Cfa003294' => 'cfa', 'Cfa003498' => 'cfa', 'Cfa004632' => 'cfa', 'Cfa009143' => 'cfa', 'Cfa010698' => 'cfa', 'Cfa015199' => 'cfa', 'Cfa019531' => 'cfa', 'Ciclev10007618m.g' => 'ccl', 'Ciclev10018994m.g' => 'ccl', 'Ciclev10025332m.g' => 'ccl', 'Ciclev10029833m.g' => 'ccl', 'Ciclev10031068m.g' => 'ccl', 'CiPaw.01G095800' => 'cil', 'CiPaw.01G215000' => 'cil', 'CiPaw.02G051800' => 'cil', 'CiPaw.03G235500' => 'cil', 'CiPaw.05G017200' => 'cil', 'CiPaw.05G150800' => 'cil', 'ClCG06G000970' => 'cla', 'ClCG06G010420' => 'cla', 'ClCG08G009170' => 'cla', 'ClCG08G018070' => 'cla', 'ClCG09G003630' => 'cla', 'COL.COLO4_08221' => 'col', 'COL.COLO4_30821' => 'col', 'COL.COLO4_32522' => 'col', 'COL.COLO4_34937' => 'col', 'COL.COLO4_36966' => 'col', 'Cpa.g.c29923.4' => 'cpa', 'Cpa.g.sc106.55' => 'cpa', 'Cpa.g.sc23.147' => 'cpa', 'Cpa.g.sc25.157' => 'cpa', 'Cpa.g.sc69.30' => 'cpa', 'Cpa.g.sc9.321' => 'cpa', 'CsaV3_1G030890' => 'csa', 'CsaV3_2G024570' => 'csa', 'CsaV3_6G006820' => 'csa', 'CsaV3_6G035940' => 'csa', 'CsaV3_7G031550' => 'csa', 'CSS0002195' => 'camsi', 'CSS0006407' => 'camsi', 'CSS0009971' => 'camsi', 'CSS0014403' => 'camsi', 'CSS0017423' => 'camsi', 'CSS0021096' => 'camsi', 'CSS0024002' => 'camsi', 'CSS0025977' => 'camsi', 'CSS0031933' => 'camsi', 'CSS0032766' => 'camsi', 'CSS0041308' => 'camsi', 'CSS0042950' => 'camsi', 'CSS0045437' => 'camsi', 'CSS0049835' => 'camsi', 'DCAR_001689' => 'dca', 'DCAR_016103' => 'dca', 'DCAR_018572' => 'dca', 'DCAR_023979' => 'dca', 'DCAR_028427' => 'dca', 'DCAR_029583' => 'dca', 'DCAR_031102' => 'dca', 'Dinv05084' => 'din', 'Dinv15302' => 'din', 'Dinv20403' => 'din', 'Dinv24859' => 'din', 'Dinv36601' => 'din', 'Dinv42235' => 'din', 'Dinv43506' => 'din', 'Dinv43947' => 'din', 'Dinv44159' => 'din', 'Duzib132G0123' => 'dzi', 'Duzib150G1244' => 'dzi', 'Duzib151G0684' => 'dzi', 'Duzib168G0694' => 'dzi', 'Duzib192G0787' => 'dzi', 'Duzib212G0594' => 'dzi', 'Duzib235G0922' => 'dzi', 'Duzib248G1152' => 'dzi', 'Duzib268G0812' => 'dzi', 'Duzib268G1676' => 'dzi', 'ECA233G2480' => 'eca', 'ECA233G4892' => 'eca', 'ECA233G5137' => 'eca', 'ECA234G3466' => 'eca', 'ECA240G3135' => 'eca', 'ECA247G4134' => 'eca', 'ECA248G3897' => 'eca', 'EL10Ac3g06015' => 'bvu', 'EL10Ac6g13672' => 'bvu', 'EL10Ac7g16451' => 'bvu', 'EL10Ac8g18547' => 'bvu', 'Eucgr.B03344' => 'egr', 'Eucgr.C01078' => 'egr', 'Eucgr.F02476' => 'egr', 'Eucgr.H00341' => 'egr', 'FAN05G0492' => 'fan', 'FAN07G1798' => 'fan', 'FAN09G3539' => 'fan', 'FAN12G2269' => 'fan', 'FAN14G4613' => 'fan', 'FAN15G1951' => 'fan', 'FAN15G2496' => 'fan', 'FAN17G0538' => 'fan', 'FAN17G2219' => 'fan', 'FAN19G1687' => 'fan', 'FAN19G2164' => 'fan', 'FAN20G2686' => 'fan', 'FAN22G0662' => 'fan', 'FAN23G1643' => 'fan', 'FAN23G2640' => 'fan', 'FAN24G1245' => 'fan', 'FAN26G1785' => 'fan', 'FAN26G2746' => 'fan', 'FAN26G3024' => 'fan', 'FAN27G0552' => 'fan', 'FAN28G0453' => 'fan', 'FAN28G2903' => 'fan', 'FvH4_1g05440' => 'fve', 'FvH4_1g23460' => 'fve', 'FvH4_2g04240' => 'fve', 'FvH4_4g34410' => 'fve', 'FvH4_6g35250' => 'fve', 'Glyma.01G031300' => 'gma', 'Glyma.02G034500' => 'gma', 'Glyma.03G264000' => 'gma', 'Glyma.05G012600' => 'gma', 'Glyma.07G042600' => 'gma', 'Glyma.08G158800' => 'gma', 'Glyma.11G126000' => 'gma', 'Glyma.12G050600' => 'gma', 'Glyma.13G345500' => 'gma', 'Glyma.15G028800' => 'gma', 'Glyma.15G267500' => 'gma', 'Glyma.16G010900' => 'gma', 'Glyma.17G120700' => 'gma', 'Glyma.20G056100' => 'gma', 'Gohir.A02G011100' => 'ghi', 'Gohir.A03G140000' => 'ghi', 'Gohir.A04G118500' => 'ghi', 'Gohir.A05G021100' => 'ghi', 'Gohir.A07G003500' => 'ghi', 'Gohir.A10G052200' => 'ghi', 'Gohir.A10G140000' => 'ghi', 'Gohir.D02G011900' => 'ghi', 'Gohir.D02G162800' => 'ghi', 'Gohir.D04G160200' => 'ghi', 'Gohir.D05G022500' => 'ghi', 'Gohir.D06G114200' => 'ghi', 'Gohir.D07G003900' => 'ghi', 'Gohir.D10G053800' => 'ghi', 'Gohir.D10G126800' => 'ghi', 'Gorai.001G003600' => 'gra', 'Gorai.005G015300' => 'gra', 'Gorai.005G182800' => 'gra', 'Gorai.009G022800' => 'gra', 'Gorai.010G130500' => 'gra', 'Gorai.011G057400' => 'gra', 'Gorai.011G139700' => 'gra', 'Gorai.012G147600' => 'gra', 'GSVIVG01005996001' => 'vvi', 'GSVIVG01010850001' => 'vvi', 'GSVIVG01015437001' => 'vvi', 'GSVIVG01016707001' => 'vvi', 'GSVIVG01020241001' => 'vvi', 'HanXRQChr01g0017391' => 'han', 'HanXRQChr04g0094471' => 'han', 'HanXRQChr05g0139151' => 'han', 'HanXRQChr06g0179201' => 'han', 'HanXRQChr08g0208801' => 'han', 'HanXRQChr12g0374811' => 'han', 'HanXRQChr12g0379701' => 'han', 'HanXRQChr12g0380281' => 'han', 'HanXRQChr13g0419851' => 'han', 'HanXRQChr15g0469171' => 'han', 'HanXRQChr17g0569811' => 'han', 'HanXRQChr17g0569821' => 'han', 'Haze_01450' => 'cav', 'Haze_03278' => 'cav', 'Haze_08206' => 'cav', 'Haze_08533' => 'cav', 'Haze_10228' => 'cav', 'Haze_12177' => 'cav', 'Haze_16083' => 'cav', 'Haze_25677' => 'cav', 'Hma1.2p1_0090F.1_g046025' => 'hma', 'Hma1.2p1_0128F.1_g059870' => 'hma', 'Hma1.2p1_0324F.1_g125630' => 'hma', 'Hma1.2p1_0421F.1_g149940' => 'hma', 'Hma1.2p1_0867F.1_g230180' => 'hma', 'Hma1.2p1_1773F.1_g301770' => 'hma', 'HPP92_003802' => 'vpl', 'HPP92_005580' => 'vpl', 'HPP92_005594' => 'vpl', 'HPP92_005595' => 'vpl', 'HPP92_006067' => 'vpl', 'HPP92_006068' => 'vpl', 'HPP92_011067' => 'vpl', 'HPP92_015436' => 'vpl', 'Hund03179' => 'sun', 'Hund05718' => 'sun', 'Hund05994' => 'sun', 'Hund09178' => 'sun', 'Hund12403' => 'sun', 'Hund25346' => 'sun', 'Lalb_Chr03g0026011' => 'lal', 'Lalb_Chr05g0216901' => 'lal', 'Lalb_Chr07g0178631' => 'lal', 'Lalb_Chr14g0372531' => 'lal', 'Lalb_Chr15g0076761' => 'lal', 'Lalb_Chr22g0352061' => 'lal', 'Lalb_Chr24g0396741' => 'lal', 'Lalb_Chr25g0283761' => 'lal', 'Lj1g0025180' => 'lja', 'Lj2g0021682' => 'lja', 'Lj3A42T21' => 'lonja', 'Lj3C1052T10' => 'lonja', 'Lj3C50T6' => 'lonja', 'Lj3g0012404' => 'lja', 'Lj3g0014114' => 'lja', 'Lj3g0019803' => 'lja', 'Lj4g0018297' => 'lja', 'Lj6A108G19' => 'lonja', 'Lj6C108T8' => 'lonja', 'Lj7A641T80' => 'lonja', 'Lj9A327T36' => 'lonja', 'Lj9A619T35' => 'lonja', 'Lj9C327G12' => 'lonja', 'Lsat_1_v5_gn_1_37760' => 'lsa', 'Lsat_1_v5_gn_1_87481' => 'lsa', 'Lsat_1_v5_gn_3_109761' => 'lsa', 'Lsat_1_v5_gn_4_5860' => 'lsa', 'Lsat_1_v5_gn_5_71201' => 'lsa', 'Lsat_1_v5_gn_8_157120' => 'lsa', 'Lsat_1_v5_gn_8_94621' => 'lsa', 'Manes.04G047100' => 'mes', 'Manes.04G047109' => 'mes', 'Manes.10G082100' => 'mes', 'Manes.10G153200' => 'mes', 'Manes.11G015700' => 'mes', 'Manes.11G125500' => 'mes', 'Manes.12G029000' => 'mes', 'Manes.16G064600' => 'mes', 'Mapoly0073s0066' => 'mpo', 'MBI03_g15322_MAGBIO' => 'mbi', 'MBI04_g09727_MAGBIO' => 'mbi', 'MBI05_g11250_MAGBIO' => 'mbi', 'MBI07_g18521_MAGBIO' => 'mbi', 'MBI13_g01664_MAGBIO' => 'mbi', 'MBI16_g26454_MAGBIO' => 'mbi', 'MD04G1045400' => 'mdo', 'MD05G1099200' => 'mdo', 'MD09G1177200' => 'mdo', 'MD13G1091800' => 'mdo', 'MD13G1256500' => 'mdo', 'MD15G1190300' => 'mdo', 'MD16G1092400' => 'mdo', 'MD17G1097200' => 'mdo', 'MD17G1149100' => 'mdo', 'Medtr0050s0010' => 'mtr', 'Medtr0065s0150' => 'mtr', 'Medtr2g062300' => 'mtr', 'Medtr2g099095' => 'mtr', 'Medtr4g068050' => 'mtr', 'Medtr4g112035' => 'mtr', 'Medtr5g034370' => 'mtr', 'Medtr5g034380' => 'mtr', 'MELO3C010661.2' => 'cme', 'MELO3C022442.2' => 'cme', 'MELO3C023499.2' => 'cme', 'MELO3C025312.2' => 'cme', 'MELO3C026517.2' => 'cme', 'Migut.B00432' => 'egut', 'Migut.B00445' => 'egut', 'Migut.D00922' => 'egut', 'Migut.J00742' => 'egut', 'Migut.L01414' => 'egut', 'Migut.N01653' => 'egut', 'Migut.N03096' => 'egut', 'MSTRG.16681' => 'ama', 'MSTRG.19330' => 'ama', 'MSTRG.20218' => 'ama', 'MSTRG.22011' => 'ama', 'MSTRG.24573' => 'ama', 'MSTRG.28107' => 'ama', 'MSTRG.4544' => 'ama', 'MSTRG.7899' => 'ama', 'Nitab4.5_0000113g0290' => 'nta', 'Nitab4.5_0000357g0010' => 'nta', 'Nitab4.5_0000468g0170' => 'nta', 'Nitab4.5_0001058g0050' => 'nta', 'Nitab4.5_0001105g0050' => 'nta', 'Nitab4.5_0001586g0200' => 'nta', 'Nitab4.5_0002494g0010' => 'nta', 'Nitab4.5_0002722g0020' => 'nta', 'Nitab4.5_0003537g0030' => 'nta', 'Nitab4.5_0004308g0060' => 'nta', 'Nitab4.5_0006425g0010' => 'nta', 'Nitab4.5_0007616g0010' => 'nta', 'Nitab4.5_0008075g0030' => 'nta', 'Nitab4.5_0009826g0010' => 'nta', 'Nitab4.5_0012119g0020' => 'nta', 'Nn1g09585' => 'nnu', 'Nn2g14320' => 'nnu', 'Nn2g15828' => 'nnu', 'Nn2g15915' => 'nnu', 'Nn4g22799' => 'nnu', 'Nn4g24971' => 'nnu', 'Nn6g35645' => 'nnu', 'Nn7g37579' => 'nnu', 'Oeu000387.1' => 'oeu', 'Oeu003843.1' => 'oeu', 'Oeu010442.1' => 'oeu', 'Oeu013445.1' => 'oeu', 'Oeu020492.1' => 'oeu', 'Oeu034443.3' => 'oeu', 'Oeu041508.1' => 'oeu', 'Oeu056733.2' => 'oeu', 'Oeu063087.1' => 'oeu', 'Os01g0108800' => 'osa', 'Os03g0181800' => 'osa', 'Os07g0588300' => 'osa', 'Os08g0541500' => 'osa', 'Os09g0516700' => 'osa', 'Os11g0120200' => 'osa', 'Os12g0120000' => 'osa', 'Peaxi162Scf00003g02736' => 'pax', 'Peaxi162Scf00016g02837' => 'pax', 'Peaxi162Scf00038g01940' => 'pax', 'Peaxi162Scf00180g00312' => 'pax', 'Peaxi162Scf00338g00223' => 'pax', 'Peaxi162Scf00402g00943' => 'pax', 'Peaxi162Scf00504g00098' => 'pax', 'Peaxi162Scf00546g00222' => 'pax', 'PGR083G2190' => 'pgr', 'PGR102G0434' => 'pgr', 'PGR119G1210' => 'pgr', 'PGR120G0006' => 'pgr', 'PGR142G0209' => 'pgr', 'PGR142G0446' => 'pgr', 'PGSC0003DMG400000381' => 'stu', 'PGSC0003DMG400003237' => 'stu', 'PGSC0003DMG400022904' => 'stu', 'PGSC0003DMG400025748' => 'stu', 'PGSC0003DMG400028857' => 'stu', 'PGSC0003DMG400030993' => 'stu', 'PGSC0003DMG400031129' => 'stu', 'Phvul.002G071800' => 'pvu', 'Phvul.003G176500' => 'pvu', 'Phvul.005G042800' => 'pvu', 'Phvul.005G154300' => 'pvu', 'Phvul.009G262500' => 'pvu', 'Phvul.010G126100' => 'pvu', 'Phvul.011G052900' => 'pvu', 'Potri.001G294600' => 'ptr', 'Potri.003G070200' => 'ptr', 'Potri.007G131600' => 'ptr', 'Potri.008G192300' => 'ptr', 'Potri.009G024800' => 'ptr', 'Potri.010G038600' => 'ptr', 'Potri.017G026200' => 'ptr', 'Potri.018G072500' => 'ptr', 'Pp3c11_800' => 'ppa', 'Pp3c1_210' => 'ppa', 'Pp3c1_38260' => 'ppa', 'Pp3c2_28590' => 'ppa', 'Pp3c2_3720' => 'ppa', 'Pp3c7_26930' => 'ppa', 'Prupe.1G198600' => 'ppe', 'Prupe.1G254000' => 'ppe', 'Prupe.2G001500' => 'ppe', 'Prupe.3G036500' => 'ppe', 'Prupe.7G226800' => 'ppe', 'Prupe.8G143800' => 'ppe', 'Psat1g109640' => 'psa', 'Psat1g129440' => 'psa', 'Psat2g106200' => 'psa', 'Psat4g042960' => 'psa', 'Psat4g043000' => 'psa', 'Psat5g290360' => 'psa', 'Psat7g209400' => 'psa', 'PSO017G4930' => 'pso', 'PSO063G5642' => 'pso', 'PSO223G0029' => 'pso', 'PSO339G1373' => 'pso', 'PSO339G4027' => 'pso', 'PSO384G1576' => 'pso', 'PSO386G0047' => 'pso', 'PSO541G2550' => 'pso', 'PSO675G7134' => 'pso', 'PSO675G8077' => 'pso', 'PSO832G2552' => 'pso', 'QL02p086159' => 'qlo', 'QL04p002020' => 'qlo', 'QL05p003206' => 'qlo', 'QL08p001505' => 'qlo', 'QL08p001512' => 'qlo', 'QL09p039118' => 'qlo', 'QL10p051216' => 'qlo', 'QL11p030810' => 'qlo', 'RcHm_v2.0_Chr2g0091101' => 'rch', 'RcHm_v2.0_Chr2g0118831' => 'rch', 'RcHm_v2.0_Chr2g0146611' => 'rch', 'RcHm_v2.0_Chr4g0443831' => 'rch', 'RcHm_v2.0_Chr6g0253661' => 'rch', 'Rhsim01G0091300' => 'rsi', 'Rhsim08G0241700' => 'rsi', 'Rhsim09G0021700' => 'rsi', 'Rhsim11G0153400' => 'rsi', 'Rhsim12G0057900' => 'rsi', 'Rhsim12G0120000' => 'rsi', 'RhsimUnG0124600' => 'rsi', 'RhsimUnG0138000' => 'rsi', 'RhsimUnG0193300' => 'rsi', 'Sabra01G0127800' => 'sbr', 'Sabra01G0127900' => 'sbr', 'Sabra03G0041500' => 'sbr', 'Sabra07G0106800' => 'sbr', 'Sabra07G0118700' => 'sbr', 'Sabra08G0145800' => 'sbr', 'Sabra09G0016400' => 'sbr', 'Sabra10G0027600' => 'sbr', 'Sabra16G0184100' => 'sbr', 'Sabra17G0000900' => 'sbr', 'Sabra17G0016000' => 'sbr', 'Sabra18G0064100' => 'sbr', 'SalBow1G7410' => 'sbo', 'SalBow2G2423' => 'sbo', 'SalBow2G2964' => 'sbo', 'SalBow6G2995' => 'sbo', 'SalBow6G5380' => 'sbo', 'SalBow7G1353' => 'sbo', 'SalBow7G3501' => 'sbo', 'Sc08g0004520' => 'sci', 'Sc08g0004530' => 'sci', 'Sc08g0007130' => 'sci', 'Sc10g0007950' => 'sci', 'Sc11g0001190' => 'sci', 'Sc13g0006710' => 'sci', 'Sed0000679' => 'sed', 'Sed0004489' => 'sed', 'Sed0012371' => 'sed', 'Sed0018647' => 'sed', 'Sed0021620' => 'sed', 'Sed0023905' => 'sed', 'SEGI_05455' => 'sgi', 'SEGI_07181' => 'sgi', 'SEGI_11236' => 'sgi', 'SEGI_12761' => 'sgi', 'SEGI_19269' => 'sgi', 'SEGI_19662' => 'sgi', 'SEGI_39947' => 'sgi', 'SGA_v2.0_scaffold112G31681' => 'sas', 'SGA_v2.0_scaffold165G38244' => 'sas', 'SGA_v2.0_scaffold225G43037' => 'sas', 'SGA_v2.0_scaffold31G12816' => 'sas', 'SGA_v2.0_scaffold322G48601' => 'sas', 'SGA_v2.0_scaffold510G52621' => 'sas', 'SGA_v2.0_scaffold68G22845' => 'sas', 'SHI02610' => 'shi', 'SHI02611' => 'shi', 'SHI27223' => 'shi', 'SMO347G0028' => 'smo', 'SMO351G0407' => 'smo', 'Solyc01g081640.4' => 'sly', 'Solyc01g107120.3' => 'sly', 'Solyc03g122080.3' => 'sly', 'Solyc05g005580.3' => 'sly', 'Solyc06g073110.3' => 'sly', 'Solyc10g049790.1' => 'sly', 'Solyc10g049800.2' => 'sly', 'Solyc12g007020.2' => 'sly', 'Solyc12g049500.3' => 'sly', 'Sopen01g033190' => 'spe', 'Sopen01g049380' => 'spe', 'Sopen03g040860' => 'spe', 'Sopen06g029460' => 'spe', 'Sopen10g020600' => 'spe', 'Sopen10g028430' => 'spe', 'Sopen12g002990' => 'spe', 'Sopen12g023990' => 'spe', 'Sp1g07400' => 'spa', 'Sp1g21170' => 'spa', 'Sp3g12410' => 'spa', 'Sp3g17650' => 'spa', 'Sp4g14280' => 'spa', 'Sp5g25460' => 'spa', 'Sp7g10950' => 'spa', 'TAR362G0289' => 'tar', 'TAR369G0294' => 'tar', 'TAR371G0352' => 'tar', 'TAR376G0576' => 'tar', 'TAR376G0756' => 'tar', 'TAR624G0890' => 'tar', 'TAR626G1308' => 'tar', 'TAR629G1031' => 'tar', 'TAR629G1975' => 'tar', 'TAR633G0692' => 'tar', 'TAR633G0810' => 'tar', 'TAR636G0934' => 'tar', 'TAR636G1042' => 'tar', 'TAR680G0005' => 'tar', 'TAR680G0006' => 'tar', 'THA.LOC104804579' => 'tha', 'THA.LOC104805816' => 'tha', 'THA.LOC104808945' => 'tha', 'THA.LOC104810376' => 'tha', 'THA.LOC104821115' => 'tha', 'THA.LOC104825386' => 'tha', 'THA.LOC104826177' => 'tha', 'Thecc.02G116200' => 'tca', 'Thecc.02G248500' => 'tca', 'Thecc.04G174200' => 'tca', 'Thecc.06G126000' => 'tca', 'Thecc.09G115300' => 'tca', 'Thhalv10006887m.g' => 'esa', 'Thhalv10007309m.g' => 'esa', 'Thhalv10016478m.g' => 'esa', 'Thhalv10020538m.g' => 'esa', 'Thhalv10022420m.g' => 'esa', 'Thhalv10024576m.g' => 'esa', 'TPR.G13569' => 'tpr', 'TPR.G16159' => 'tpr', 'TPR.G18839' => 'tpr', 'TPR.G27714' => 'tpr', 'TPR.G34245' => 'tpr', 'TPR.G6594' => 'tpr', 'TWI09G0078' => 'twi', 'TWI15G0939' => 'twi', 'TWI23G1240' => 'twi', 'TWI36G1131' => 'twi', 'TWI38G1157' => 'twi', 'TWI63G1811' => 'twi', 'TWI75G0496' => 'twi', 'unitig_18.g30054' => 'ugi', 'unitig_21.g20719' => 'ugi', 'unitig_22.g6465' => 'ugi', 'unitig_25.g30566' => 'ugi', 'unitig_578.g15806' => 'ugi', 'unitig_578.g16256' => 'ugi', 'unitig_578.g16257' => 'ugi', 'unitig_8.g4810' => 'ugi', 'vmacro00615' => 'vma', 'vmacro00678' => 'vma', 'vmacro01965' => 'vma', 'vmacro15062' => 'vma', 'vmacro16252' => 'vma', 'vmacro20673' => 'vma', 'vmacro22283' => 'vma', 'VMungo0331G1425' => 'vmu', 'VMungo1080G0037' => 'vmu', 'VMungo1080G1241' => 'vmu', 'VMungo1127G0028' => 'vmu', 'VMungo1215G0150' => 'vmu', 'VMungo1215G0287' => 'vmu', 'VMungo1215G1082' => 'vmu', 'VMungo1215G3092' => 'vmu', 'VMungo1309G0713' => 'vmu', 'VMungo1309G1494' => 'vmu', 'Zm00001eb006040' => 'zma', 'Zm00001eb031480' => 'zma', 'Zm00001eb037300' => 'zma', 'Zm00001eb102800' => 'zma', 'Zm00001eb108180' => 'zma', 'Zm00001eb126560' => 'zma', 'Zm00001eb195530' => 'zma', 'Zm00001eb250860' => 'zma', 'Zm00001eb293500' => 'zma', 'Zm00001eb318630' => 'zma', 'Zm00001eb365230' => 'zma', 'Zm00001eb390870' => 'zma' ) $gf_id = 'HOM05D000732' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000732' ) $data_identifier = 'HOM05D000732' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 34, 'bol' => (int) 19, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 9, 'sbr' => (int) 12, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1